MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2780051535577345
cnr4.388482124988936
efc0.5789360024920038
fber99.89046478271484
fwhmavg4.0087
fwhmx3.99685
fwhmy4.14073
fwhmz3.88852
icvscsf0.20388261103848623
icvsgm0.4570302415739375
icvswm0.3390871473875763
inumed1.0001320838928223
inurange0.3224980443716049
qi10.0
qi20.002692653296622002
rpvecsf24.024768858248134
rpvegm11.861617373776197
rpvewm18.619335044868176
sizex180
sizey256
sizez256
snrcsf2.9854053000176655
snrgm11.103447693039852
snrtotal10.075066985890652
snrwm16.136347964614444
snrdcsf15.415763852972216
snrdgm28.98704532196747
snrdtotal30.23188487295206
snrdwm46.2928454439165
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.298505735024757
summarybgmad14.152029991149902
summarybgmean50.98088836669922
summarybgmedian49.24546813964844
summarybgn2977954.0
summarybgp0529.856753635406495
summarybgp9577.96519737243652
summarybgstdv15.355896949768066
summarycsfk-0.28429477356318733
summarycsfmad122.42449951171875
summarycsfmean328.7079772949219
summarycsfmedian333.0060119628906
summarycsfn14437.0
summarycsfp05146.6485107421875
summarycsfp95500.12712402343726
summarycsfstdv111.5407943725586
summarygmk0.31309814586487716
summarygmmad53.958885192871094
summarygmmean626.2444458007812
summarygmmedian626.1681518554688
summarygmn42395.0
summarygmp05533.3002075195313
summarygmp95718.2019775390625
summarygmstdv56.39336395263672
summarywmk0.8568130591292751
summarywmmad49.9688720703125
summarywmmean989.9609985351562
summarywmmedian1000.0020751953125
summarywmn188235.0
summarywmp05865.6685668945313
summarywmp951074.1946533203125
summarywmstdv61.97185516357422
tpmoverlapcsf0.19970948994159698
tpmoverlapgm0.5310162901878357
tpmoverlapwm0.545877993106842
wm2max0.5791180014013753

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumd20d9584c291279b2891fff548c6844a
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.