MRIQC: individual T1w report

Summary

Subject ID: 023_ControlPre.
Date and time: 2018-05-07, 01:13.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2780051535577345
cnr			4.388482124988936
efc			0.5789360024920038
fber			99.89046478271484
fwhm	avg		4.0087
fwhm	x		3.99685
fwhm	y		4.14073
fwhm	z		3.88852
icvs	csf		0.20388261103848623
icvs	gm		0.4570302415739375
icvs	wm		0.3390871473875763
inu	med		1.0001320838928223
inu	range		0.3224980443716049
qi	1		0.0
qi	2		0.002692653296622002
rpve	csf		24.024768858248134
rpve	gm		11.861617373776197
rpve	wm		18.619335044868176
size	x		180
size	y		256
size	z		256
snr	csf		2.9854053000176655
snr	gm		11.103447693039852
snr	total		10.075066985890652
snr	wm		16.136347964614444
snrd	csf		15.415763852972216
snrd	gm		28.98704532196747
snrd	total		30.23188487295206
snrd	wm		46.2928454439165
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.298505735024757
summary	bg	mad	14.152029991149902
summary	bg	mean	50.98088836669922
summary	bg	median	49.24546813964844
summary	bg	n	2977954.0
summary	bg	p05	29.856753635406495
summary	bg	p95	77.96519737243652
summary	bg	stdv	15.355896949768066
summary	csf	k	-0.28429477356318733
summary	csf	mad	122.42449951171875
summary	csf	mean	328.7079772949219
summary	csf	median	333.0060119628906
summary	csf	n	14437.0
summary	csf	p05	146.6485107421875
summary	csf	p95	500.12712402343726
summary	csf	stdv	111.5407943725586
summary	gm	k	0.31309814586487716
summary	gm	mad	53.958885192871094
summary	gm	mean	626.2444458007812
summary	gm	median	626.1681518554688
summary	gm	n	42395.0
summary	gm	p05	533.3002075195313
summary	gm	p95	718.2019775390625
summary	gm	stdv	56.39336395263672
summary	wm	k	0.8568130591292751
summary	wm	mad	49.9688720703125
summary	wm	mean	989.9609985351562
summary	wm	median	1000.0020751953125
summary	wm	n	188235.0
summary	wm	p05	865.6685668945313
summary	wm	p95	1074.1946533203125
summary	wm	stdv	61.97185516357422
tpm	overlap	csf	0.19970948994159698
tpm	overlap	gm	0.5310162901878357
tpm	overlap	wm	0.545877993106842
wm2max			0.5791180014013753

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	d20d9584c291279b2891fff548c6844a
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.